We strive to enable robust and reproducible omics data analysis through standardised pipelines. Core features of these pipelines are the easy of use, scaleability, and modularity. Following these principles, we curated, modified, and set up nf-core pipelines.
To make running pipelines simple, we provide template job scripts for each pipeline. After copying them to your project folder and changing input files/desired parameters, they are ready to be submitted via the HPC clusters' batch system. Template job scripts are located at:
/nfsdata/scripts/job_scripts
We currently have the following pipelines in place for different omics modalities: